AminoGraph is a command line tool that can infer a dependency graph from an amino acid sequence. It is the first freely available tool to investigate dependency graphs, producing interactive HTML reports and machine-readable JSON objects.

How Do I Use It?

  1. Install Rust
  2. Install AminoGraph via cargo install aminograph
  3. Run AminoGraph via aminograph aligned-fasta.fa output-directory

Once the tool has run, it will place outputs in the specified output directory. These outputs include:

  • report.html An interactive HTML file that allows investigating the inferred graph.
  • stats.json A JSON file providing machine readable statistics on the inferred graph.
  • graph.json A JSON file providing a machine readable version of the graph

Where is the Code?

The code is hosted on GitHub